Vivarium Tobacco Intervention Comparison

Research repository for the Vivarium MSLT Tobacco Intervention Comparison project.

Installation

To set up a new research environment, open up a terminal and run:

$> conda create --name=mslt_tobacco python=3.6 hdf5
...standard conda install stuff...
$> conda activate mslt_tobacco
(mslt_tobacco) $> git clone git@github.com:ihmeuw/vivarium_unimelb_tobacco_intervention_comparison.git
(mslt_tobacco) $> cd vivarium_unimelb_tobacco_intervention_comparison
(mslt_tobacco) $> pip install -e .

See the Getting started section of the tutorial for further details.

Contents:

• Concepts
  • Chronic disease
  • Acute disease and other events
  • Risk factors
  • Interventions
  • Input data requirements
  • Recording life table outputs
  • Uncertainty analyses
• Tutorials
  • Getting started
  • The business-as-usual (BAU) scenario
  • Chronic heart disease
  • Tobacco smoking: effect of interventions
  • Conclusion
• Advanced topics
  • Uncertainty analyses
  • Alternative BAU: Immediate recovery upon cessation
  • Alternative BAU: Constant tobacco prevalence
  • Writing a custom intervention
  • Writing a custom observer
  • Writing a custom risk factor